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Chordoma — A Rare Tumour of the Skull Base, Spine & Sacrum

A chordoma is a rare bone cancer that grows along the centre line of the body — at the base of the skull (the clivus), anywhere down the spine, and most often in the sacrum and tailbone. It develops from leftover cells of the notochord, the embryonic structure around which your spine first formed. Chordomas grow slowly, but they are stubbornly persistent: they invade nearby bone and nerves and tend to come back unless they are removed completely. This guide explains where chordoma starts, the warning signs to watch for, how it is diagnosed on MRI and biopsy, and how CION's bone-sarcoma team plans en bloc surgery and high-dose radiation across 7 NABH-accredited Hyderabad locations.

  • Three home sites — skull base (clivus), mobile spine, and the sacrum/coccyx where most chordomas arise
  • Slow but locally aggressive — rarely spreads early, but invades bone and nerve and recurs if not cleared
  • The first surgery is decisive — a complete en bloc removal offers the best chance of long-term control
  • Multidisciplinary care — surgical, radiation & medical oncology plan every chordoma at the tumour board
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What Is a Chordoma?

A chordoma is a rare malignant tumour that grows out of the bone of the spinal column and skull base. It begins in cells left over from the notochord — the flexible, rod-shaped structure that your spine forms around before you are born. In most people these notochordal cells disappear, but small clusters can persist inside the vertebrae, the sacrum, and the clivus at the base of the skull. Decades later, one of those clusters can begin to grow into a chordoma. This is why chordomas appear almost only along the body's midline axis and almost never in the limbs.

Chordoma is genuinely uncommon — roughly one new case per million people each year — which is exactly why a careful, specialist diagnosis matters so much. Because it is rare and grows slowly, it is often mistaken at first for something more ordinary: chronic back pain, a slipped disc, sinus trouble, or a benign bone lesion. It belongs to the broader family of bone sarcomas, and you can see how it sits alongside osteosarcoma, Ewing sarcoma and chondrosarcoma on our types of bone sarcoma guide. For the full picture of how sarcomas are worked up and treated, the sarcoma — overview hub ties every topic together.

Where Does Chordoma Grow? The Three Main Sites

Most common

Sacrum & Coccyx

Around half of all chordomas form in the sacrum (the base of the spine) and tailbone. Because there is plenty of room low in the pelvis, these tumours can grow large and silent before producing tailbone pain, sciatica, or changes in bowel and bladder control.

Skull base

Clivus (Skull Base)

About a third arise at the clivus, the bone behind the nose and in front of the brainstem. Sitting next to the brainstem, cranial nerves and major arteries, even a small clival chordoma can cause headache, double vision, or facial numbness early.

Mobile spine

Cervical, Thoracic & Lumbar Spine

The remainder occur in the movable vertebrae of the neck, mid-back and lower back, where they can press on the spinal cord or nerve roots and cause pain, numbness, or weakness in an arm or leg.

Did You Know? Chordoma is one of the few cancers that arises from an embryonic leftover. The notochord that your spine grew around before birth normally vanishes, but tiny remnants can linger inside the bones of the skull base, spine and tailbone. A chordoma is essentially one of those dormant notochord clusters waking up — which is why this cancer keeps strictly to the body's midline and is almost never found in the arms or legs.

Symptoms of Chordoma — Why It Is Often Missed at First

Chordoma is slow-growing, so its symptoms creep in gradually and depend entirely on where the tumour is and which nearby structure it is pressing on. There is no single "chordoma symptom"; instead there is a pattern of persistent, location-specific complaints that do not settle with the usual treatments. The most useful question to ask is not "is this serious?" but "why has this not gone away?"

Skull Base (Clival) Chordoma

  • Persistent headache behind the eyes or at the back of the head that does not respond to usual painkillers.
  • Double vision or a squint, caused by pressure on the nerves that move the eyes.
  • Facial numbness, difficulty swallowing, or a change in voice as cranial nerves are affected.
  • Nasal blockage or a sense of fullness behind the nose that does not clear like ordinary sinusitis.

Sacral & Spinal Chordoma

  • Low back or tailbone pain that is constant, often worse when sitting, and lasts for months without a clear injury.
  • Sciatica-like pain, numbness or tingling running down one or both legs.
  • Changes in bowel or bladder control — constipation, difficulty passing urine, or incontinence — which always need urgent assessment.
  • A feeling of fullness or a lump deep in the lower pelvis or buttock.

The red flag is persistence. Chronic, unexplained pain at the tailbone, neck or skull base that has been treated as a disc problem, piles, or sinusitis without ever resolving — especially when accompanied by new neurological symptoms such as double vision, leg weakness, or a change in bowel or bladder habit — deserves a dedicated MRI of that region. Catching a chordoma while it is still small and confined gives the surgeon the best chance of removing it completely.

Worried It Might Be a Chordoma? Ask a Specialist

Send us your MRI, CT and any biopsy report. Our bone-sarcoma team will tell you honestly whether this looks like a chordoma and what the right next step is. Free written second opinion included.

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Dr. Naresh Gundu
Medical Oncologist

Dr. Naresh Gundu

MBBS, DNB (Internal Medicine), DM (Medical Oncology)

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Medical Oncologist

Dr. C. Raghavendra Reddy

MBBS(Gold Medal), DNB(General Medicine), DM(Medical Oncology)(Gold Medal)

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Medical Oncologist

Dr. Bharati Devi Gorantla

MBBS, MD(General Medicine), DM(Medical Oncology)(Adyar,Chennai), ECMO, MRCP SCE(UK)

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Dr. Owais Mohammed
Medical Oncologist

Dr. Owais Mohammed

MBBS, MD (General Medicine), DrNB (Medical Oncology), ECMO, MRCP SCE (Medical Oncology) (UK)

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Dr. T. Raghavender Reddy
Medical Oncologist

Dr. T. Raghavender Reddy

MBBS, DM (Medical Oncology), MD (Radiation Oncology)

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Medical Oncologist

Dr. N. Kiranmayee

MBBS, DM (Medical Oncology), MD (Internal Medicine)

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Dr. Muralidhar Muddusetty
Surgical Oncologist

Dr. Muralidhar Muddusetty

MBBS (AIIMS), MS (Surgery) (AIIMS), DNB (Surgical Oncology), MRCS (Edinburgh)

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Dr. Raghavendra Naik
Surgical Oncologist

Dr. Raghavendra Naik

MBBS, MS (General Surgery), M.Ch (Surgical Oncology)

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Dr. Mohammed  Imaduddin
Surgical Oncologist

Dr. Mohammed Imaduddin

M.B.B.S, MS (General Surgery), M.Ch (Surgical Oncology)

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Dr. Vinay Mamidala
Surgical Oncologist

Dr. Vinay Mamidala

MBBS, MS(General Surgery), M.Ch(Surgical Oncology), FMAS, FARIS(Ongoing)

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Dr. Paila Gowri Naidu
Surgical Oncologist

Dr. Paila Gowri Naidu

MBBS, MS (General Surgery), M.Ch (Surgical Oncology), FMAS

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Dr. Venkata Sushma P
Radiation Oncologist

Dr. Venkata Sushma P

MBBS, MD (Radiation Oncology)

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Radiation Oncologist

Dr. Kirti Ranjan Mohanty

MBBS, MD (Radiation Oncology)

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Dr. Gangadhar Vajrala
Radiation Oncologist

Dr. Gangadhar Vajrala

MBBS, MD (Radiation Oncology), MPH

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Hematologist

Dr. Basudev Pokhrel

MBBS, M.D (Immunohematology & Blood Transfusion)

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Dr. Mohammed Imran
Interventional Radiologist

Dr. Mohammed Imran

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Dr. Vajja Sandeep Kumar
Surgical Oncologist

Dr. Vajja Sandeep Kumar

MBBS, MS (General Surgery), DrNB (Surgical Oncology), FALS Oncology

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Surgical Oncologist

Dr. Sridhar Kamani

MBBS, MS (General Surgery), DrNB (Surgical Oncology)

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Get a Specialist Chordoma Treatment Plan

Chordoma is rare and demands a multidisciplinary team that has seen it before. Whether you have a new diagnosis or a tumour that has returned, our surgical, radiation and medical oncologists will map out your options together — across 7 Hyderabad locations with same-week appointments.

How Chordoma Is Diagnosed

Because chordoma is rare and mimics commoner problems, getting the diagnosis right — and getting it right before any surgery — is the most important first step. A planned, specialist work-up protects the one chance to remove the tumour cleanly.

MRI — the Key Imaging Test

MRI is the cornerstone of chordoma diagnosis. A chordoma has a fairly characteristic appearance — a lobulated mass that is very bright on certain MRI sequences — and the scan shows exactly how far the tumour extends, which bone it has destroyed, and its precise relationship to the brainstem, spinal cord, sacral nerves and major blood vessels. That map is what the surgeon and radiation oncologist use to decide whether and how the tumour can be removed in one piece. A CT scan is added to show the bony detail and any calcification.

Biopsy — Done Carefully, by the Right Team

A biopsy confirms that the mass is a chordoma and distinguishes it from chondrosarcoma and other lesions, partly with the help of a marker called brachyury that is specific to notochordal tumours. But a chordoma biopsy must be planned with great care: the needle track itself can carry tumour cells, so it has to be placed along a line that the surgeon can later remove together with the tumour. A carelessly placed biopsy can seed the cancer and compromise the entire operation — which is precisely why a chordoma should be biopsied by the same team that will treat it, not anywhere convenient.

Tumour Board Review

Every confirmed chordoma at CION is presented at the multidisciplinary tumour board, where the surgical oncologist, neurosurgeon or spine surgeon, radiation oncologist, radiologist and pathologist agree a single plan together. For a tumour this rare and this delicately placed, no single specialty decides alone.

Did You Know? The biopsy needle track matters as much as the tumour in chordoma. Because chordoma cells can spill along the path the needle takes, a biopsy done at the wrong angle — or by a team that will not be doing the surgery — can leave seeded cells that the surgeon cannot remove, raising the chance of recurrence. Best practice is for the same specialist team to plan the biopsy and the operation together.

Chordoma Treatment — Surgery and Radiation Together

Chordoma responds poorly to ordinary chemotherapy, so treatment rests on two pillars: removing the tumour completely with surgery, and using high-dose radiation to control any cells left behind. The balance between them depends on the tumour's location, size, and whether a clean removal is possible.

The main treatment

En Bloc Surgical Resection

The goal is to remove the chordoma in one intact piece surrounded by healthy tissue — without ever cutting into the tumour. For sacral chordoma this may mean a sacrectomy; for spinal chordoma, removing the affected vertebra; for clival chordoma, an endoscopic approach through the nose. A complete first removal offers the best long-term control.

To protect the margin

High-Dose Radiation

Chordoma needs a high radiation dose, delivered very precisely because the brainstem, spinal cord and nerves sit right beside it. Modern techniques such as proton-beam therapy and image-guided IMRT concentrate the dose on the tumour bed while sparing these critical structures — used after surgery, or as the main treatment when surgery is not safely possible.

Advanced & recurrent disease

Targeted Therapy & Trials

For chordoma that has spread or returned and can no longer be operated on, targeted drugs directed at specific tumour pathways are considered, alongside clinical-trial options. These are decided case by case by the medical oncologist and reserved for situations where surgery and radiation have been exhausted.

Because chordoma tends to recur locally, treatment does not end with surgery and radiation. Lifelong surveillance MRI is part of every plan, so that any return is caught early — when it is small and may again be treatable. This long-term partnership between you and the team is as important as the operation itself.

Send Us Your Chordoma Reports for a Free Review

Upload your MRI, CT and biopsy reports. Our tumour board will tell you whether an en bloc resection, radiation, or a combined plan is the right call for your chordoma — and what it would involve.

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Outlook, Recurrence and Recovery

Chordoma sits in an unusual place between "slow cancer" and "serious cancer." It rarely spreads early to distant organs, and many people live for years and even decades with it. But it is persistent: if it is not removed completely the first time, it tends to grow back in the same place, and each recurrence is harder to treat than the last because the surrounding anatomy has already been operated on or irradiated. This is why the completeness of the first surgery is the strongest factor in long-term outcome — a clean en bloc removal, ideally combined with high-dose radiation, gives the best chance of lasting control.

Recovery depends heavily on where the chordoma was. Sacral surgery can affect bowel, bladder and sexual function, and a rehabilitation programme with physiotherapy is planned from the start. Skull base surgery requires careful protection of vision, swallowing and the cranial nerves. Whatever the site, the aim at CION is not only to clear the cancer but to preserve as much function and quality of life as the anatomy allows — and to support you through a recovery that is often gradual.

Indicative Cost in Hyderabad

Procedure / InvestigationApprox. Cost (INR)Notes
MRI (spine / skull base)₹8,000 – ₹22,000Dedicated protocol; the key diagnostic test for chordoma
CT Scan (bony detail)₹5,000 – ₹15,000Shows bone destruction and calcification
Image-Guided Biopsy (track-planned)₹10,000 – ₹28,000Needle line positioned to be removed with the tumour
En Bloc Resection (sacral / spinal)₹2,50,000 – ₹8,00,000Varies by site, extent & reconstruction required
High-Dose Radiation (IMRT / proton centres)₹2,00,000 – ₹6,00,000+To the tumour bed; proton therapy at referral centres costs more

Costs are indicative and vary widely with tumour site and complexity. A personalised estimate is provided after your CION consultation. EMI options and cashless support through major TPAs, Aarogyasri, CGHS, ECHS & ESI are available for eligible patients.

Why Patients Choose CION for Chordoma Care

Chordoma is a once-in-a-million tumour that needs a team that plans every step together. Here is why patients across Telangana trust CION.

AIIMS-trained surgical oncologist

Dr. Muralidhar Muddusetty — bone & soft tissue sarcoma surgery, en bloc resection

Biopsy planned with the surgeon

Needle track positioned so it is removed within the resection — no tumour seeding

Multidisciplinary tumour board

Surgery, radiation, medical oncology & pathology agree one chordoma plan

High-precision radiation planning

Image-guided IMRT to spare the brainstem, spinal cord & nerves

En bloc resection as the surgical goal

A complete first removal — the strongest factor in long-term control

Lifelong surveillance & second opinion

Surveillance MRI for recurrence; review of new or returned chordoma

7 NABH-accredited Hyderabad locations

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EMI facility & insurance accepted

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With a tumour this rare, the first plan you make is the one that matters most. If you have a suspected or confirmed chordoma — or one that has come back — bring your scans to a team that treats it.

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Common questions

Chordoma — Frequently Asked Questions

Is chordoma a cancer, and is it serious?

Yes — chordoma is a malignant bone tumour (a type of bone sarcoma). It grows slowly and rarely spreads early to distant organs, so it is less aggressive in that sense than many cancers. But it is locally invasive and persistent: it eats into bone and nerves and tends to come back in the same place if it is not removed completely. That combination is why chordoma is taken seriously and treated by a specialist multidisciplinary team rather than watched.

Where does chordoma usually occur?

Chordoma forms only along the midline of the body, from notochord remnants. About half occur in the sacrum and tailbone, roughly a third at the clivus (skull base, in front of the brainstem), and the rest in the mobile cervical, thoracic and lumbar spine. Because it follows the spinal axis, chordoma is almost never found in the arms or legs. You can see how it compares with other bone sarcomas on our types of bone sarcoma guide.

What are the early symptoms of chordoma?

Symptoms depend on location and come on gradually. Skull base (clival) chordomas tend to cause persistent headache, double vision, facial numbness or nasal blockage. Sacral and spinal chordomas cause constant low back or tailbone pain, sciatica-like leg pain or numbness, and sometimes changes in bowel or bladder control. The key warning sign is persistence — pain or neurological symptoms that have been treated as a disc, sinus or pelvic problem but never resolve deserve a dedicated MRI of that region.

How is chordoma treated?

Chordoma responds poorly to ordinary chemotherapy, so treatment centres on two things: removing the tumour completely in one intact piece (en bloc surgical resection) and high-dose, very precise radiation such as proton therapy or image-guided IMRT to control any cells left at the margin. For advanced or recurrent disease that can no longer be operated on, targeted drugs and clinical trials are considered. Because chordoma can recur, lifelong surveillance MRI is part of every treatment plan.

Why does the first chordoma surgery matter so much?

Because chordoma is persistent, a complete en bloc removal at the first operation — with a clean margin of healthy tissue and an undisturbed biopsy track — gives by far the best chance of long-term control. Once a chordoma recurs, the surrounding anatomy has already been operated on or irradiated, making each subsequent treatment harder and less likely to succeed. This is why the biopsy and surgery should be planned together by an experienced sarcoma team, and why a specialist second opinion before any operation is worthwhile.

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