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Mismatch repair & MSI testing

MSI-High and Mismatch Repair Deficiency: — Testing and Treatment

MSI-high is a finding in your tumour tissue that predicts how well checkpoint inhibitors — a class of immunotherapy drugs — are likely to work. If your tumour carries this marker, it changes your treatment options in a meaningful way.

Medically reviewed by Dr. Bharati Devi Gorantla, Medical Oncologist, MBBS · MD · DM (Adyar, Chennai) · ECMO · MRCP SCE (UK) · Last reviewed August 2026

  • Testable from your biopsy — MSI or dMMR status is determined from tissue you have already had taken — no extra procedure is usually needed.
  • Predicts response to immunotherapy — MSI-H tumours respond to checkpoint inhibitors at rates not seen in most other cancer types.
  • Applies across cancer types — Pembrolizumab carries a tumour-agnostic approval for MSI-H cancers — it does not depend on where the cancer started.
  • Standard testing for several cancers — NCCN recommends universal MSI testing for all colorectal and endometrial cancers as part of routine care.
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MSI-high (MSI-H) cancers are treated with checkpoint inhibitors, a class of drugs that activate your immune system against the tumour. NCCN and ASCO recommend pembrolizumab as a standard option for MSI-H and mismatch repair deficient tumours, regardless of where the cancer started. Your oncologist confirms eligibility through a test on your biopsy tissue.

What happens after MSI-high is found in your tumour?

  1. Tissue is tested

    Your existing biopsy sample is sent for MSI testing — either immunohistochemistry to check whether MMR proteins are present, or PCR and next-generation sequencing to measure instability directly. Most laboratories run both.

  2. Results are reviewed

    Your oncologist interprets the result alongside your cancer type, stage, and overall fitness. MSI-H alone does not automatically mean you start immunotherapy — your full clinical picture matters.

  3. Eligibility is confirmed

    If MSI-H or dMMR is confirmed, your oncologist discusses which checkpoint inhibitor is appropriate for your tumour type and whether you meet the criteria set out in NCCN, ASCO, or ESMO guidance.

  4. Treatment begins as day care

    Checkpoint inhibitors are given as an intravenous infusion, typically every three to six weeks depending on the drug. At CION, this is administered as a day-care procedure — you do not need to be admitted overnight.

  5. Response is assessed at intervals

    Scans — usually CT or PET-CT coordinated with partner imaging centres — are done at regular intervals to see whether the tumour is responding. Your team adjusts the plan based on what they find.

What does MSI-high actually mean?

Your DNA has a built-in repair system. When that system — called the mismatch repair system — stops working, small errors accumulate at short repeated sequences in the genome called microsatellites. That build-up is microsatellite instability.

A tumour classed as MSI-high has accumulated a large number of these errors. This causes the tumour to produce many abnormal proteins, which are visible to your immune system in a way that most tumours are not.

That visibility is what makes checkpoint inhibitors effective here. The drugs remove the signal that was telling your immune cells to stand down, allowing the immune system to recognise and act against the tumour.

MSI-H and dMMR describe the same underlying problem from two angles — one detected by measuring the microsatellites directly, the other by checking whether the repair proteins are present or absent in the tumour tissue.

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Which drugs are used to treat MSI-high cancer?

Pembrolizumab is the most widely used checkpoint inhibitor for MSI-H and dMMR cancers. NCCN and ASCO list it as a preferred option across tumour types, and it holds a tumour-agnostic approval based on MSI-H status alone — meaning it can be considered regardless of where the cancer started.

Dostarlimab is approved for dMMR endometrial cancer and, under NCCN guidance, for other dMMR solid tumours where pembrolizumab is not suitable or available.

Nivolumab, sometimes combined with ipilimumab, is a preferred option for MSI-H colorectal cancer according to NCCN. The combination targets two different checkpoint pathways and is used in the first-line setting for this group.

All three belong to the checkpoint inhibitor class. Your oncologist will identify which is appropriate based on your cancer type, stage, treatment history, and the guidance body whose criteria best apply to your situation.

Ask your oncologist these questions

  • Has my tumour been tested for MSI status or MMR protein expression?
  • Can the test be done on my existing biopsy sample if it has not been done yet?
  • Which checkpoint inhibitor is recommended for my cancer type and stage?
  • Should my family members be referred for Lynch syndrome testing?
  • What immune side effects should I report, and how urgently?
  • Can I have the biomarker result and your recommendation in writing?

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Common questions

Frequently asked questions

What is the difference between MSI-H and dMMR?

They describe the same underlying problem from two directions. dMMR — deficient mismatch repair — means the proteins that correct DNA copying errors are not functioning. MSI-H — microsatellite instability-high — is what you see in the DNA when those proteins have failed: an accumulation of errors at short repeated sequences. Laboratories test for both, often at the same time, and NCCN and ASCO treat them as clinically equivalent. If your report shows either finding, the treatment implication is the same.

Is Lynch syndrome the same as dMMR?

Not exactly, but they are closely connected. Lynch syndrome is an inherited condition caused by a fault in one of the MMR genes — MLH1, MSH2, MSH6, or PMS2 — that a person is born with. If your tumour shows dMMR, your oncologist may recommend germline testing to find out whether Lynch syndrome is the underlying cause. Not all dMMR tumours are caused by Lynch syndrome — many acquire the fault during the cancer's development. The distinction matters for your family members, who may benefit from genetic counselling and screening.

Which cancers are most commonly MSI-high?

MSI-H occurs most often in colorectal, endometrial, gastric, and small bowel cancers, and is also found in some ovarian, biliary tract, and other solid tumours. NCCN recommends universal MSI testing for all colorectal and endometrial cancers. For other tumour types, testing is recommended when Lynch syndrome is suspected or when the cancer lacks another clear targetable alteration. Your oncologist will tell you whether your specific cancer type warrants testing if it has not been done.

How long does MSI testing take?

Usually one to two weeks from when the laboratory receives the sample. Immunohistochemistry results often come back faster than PCR or next-generation sequencing. If your original biopsy tissue is insufficient, a repeat biopsy may be needed before the test can be completed, which adds time. Ask your team when the sample was dispatched and when the result is expected, so you are not waiting without a clear timeline.

Will checkpoint inhibitors work even if my cancer is advanced?

MSI-H status is one of the stronger predictors of response to checkpoint inhibitors across cancer types, and NCCN, ASCO, and ESMO guidance supports their use at advanced stages. That said, response varies between individuals, and your oncologist will weigh your overall health, the extent of the disease, and any prior treatments before recommending a specific regimen. MSI-H is meaningful information — but your oncologist's assessment of your complete clinical picture is what shapes the treatment decision.

Is immunotherapy for MSI-high cancer available at CION?

Yes. Checkpoint inhibitors are given as day-care infusions at CION centres — you do not need an overnight admission for the treatment itself. PET-CT and other response-assessment scans are coordinated with partner imaging centres. CION does not provide CAR-T or cell therapy; if that is being considered in your case, you would be referred to a centre that offers it. Ask at your next appointment which CION centre nearest you administers immunotherapy day care.

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