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Understanding your PCR results

BCR-ABL PCR Results: — What Log Reduction Numbers Mean

Your BCR-ABL PCR result is not a straightforward percentage. It is a ratio on a logarithmic scale, and knowing what MR3.0 or MR4.5 actually means makes it much easier to follow your progress on imatinib.

Medically reviewed by Dr. C. Raghavendra Reddy, Medical Oncologist, MBBS (Gold Medal) · DNB · DM (Medical Oncology, Gold Medal) · Last reviewed August 2026

  • A log scale, not a simple percentage — A fall from 1% to 0.1% is a tenfold reduction — one whole log — not a small one-point drop.
  • Results are standardised globally — The International Scale (IS) means your result can be compared with results from any accredited laboratory anywhere in the world.
  • Milestones have named levels — MR3.0, MR4.0 and MR4.5 are specific thresholds your oncologist watches for at defined points in treatment.
  • 'Undetectable' is not the same as gone — It means the test could not find BCR-ABL at its level of sensitivity — not that no leukaemia cells remain.
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Your BCR-ABL PCR result is a ratio reported on a logarithmic scale. Each log reduction means a tenfold fall in BCR-ABL in your blood. MR3.0 means a thousandfold reduction from the standardised baseline. MR4.5 means a further tenfold reduction beyond MR4.0 — the level ELN and NCCN associate with considering a treatment break.

What each term on your PCR report means

BCR-ABL IS%
The number on your report. It is the ratio of BCR-ABL gene transcripts to a reference gene, expressed as a percentage on the International Scale. The IS suffix confirms the result has been standardised so it can be compared across accredited laboratories.
Log reduction
A base-10 measure of how far BCR-ABL has fallen from the standardised baseline. One log is a tenfold fall. Two logs is a hundredfold fall. Three logs is a thousandfold fall. Each additional log is another tenfold reduction on top of the last.
MR3.0 — Major Molecular Response (MMR)
BCR-ABL IS at or below 0.1%. This is a thousandfold reduction from the standardised baseline. ELN and NCCN both treat this as a key milestone, typically expected by twelve months on imatinib.
MR4.0
BCR-ABL IS at or below 0.01% — a ten-thousandfold reduction from baseline. Called a deep molecular response. Reaching and sustaining this level matters for later decisions about treatment.
MR4.5
BCR-ABL IS at or below 0.0032% — a 4.5-log reduction from baseline. This is the threshold most international guidelines, including ELN and NCCN, use when evaluating whether a patient may be suitable for a planned treatment break.
Undetectable (MR5.0 / CMR)
No BCR-ABL found in the sample at the test's sensitivity limit. This does not mean no leukaemia cells remain — it means the test cannot detect any at the level it can measure. It is an encouraging result, but monitoring continues.

How do you actually read a BCR-ABL PCR result?

Your report gives a percentage — something like 0.08% IS or 0.003% IS. Because these numbers sit on a log scale, small changes in the figure represent very large changes in the amount of BCR-ABL in your blood.

A result of 0.01% sounds close to 0.1%, but it is actually ten times lower. Going from 0.1% to 0.01% is a full log reduction — the same scale of change as going from 100% to 10% at the start of treatment.

This is why your oncologist focuses on which milestone you are at, and whether you are moving steadily toward the next one, rather than reacting to small fluctuations in the exact number between tests.

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What does reaching MR4.5 mean for your treatment?

MR4.5 is the depth of response that ELN and NCCN associate with discussing treatment-free remission — a planned, supervised period of stopping imatinib to see whether the response is sustained without the drug.

Reaching MR4.5 does not mean treatment stops automatically. ELN guidance requires that the response be sustained at that level for a defined period before a trial pause is considered. Your oncologist will review your full history, not a single result.

Not everyone on imatinib reaches MR4.5, and remaining at MR3.0 for many years is also a stable and well-managed position. Deeper response is not the next goal for every patient.

Questions patients ask about PCR monitoring

My result went up slightly between tests. Should I be worried?

A small fluctuation — within one log — between tests is common and often reflects normal variation in the test itself rather than disease progressing. The laboratory, sample handling, and timing of the blood draw can all affect the result slightly. What your oncologist watches for is a consistent upward trend across multiple tests, not a single higher reading. If your result has risen and you are concerned, raise it at your next appointment rather than waiting. Your team will decide whether the change sits within expected variation or whether testing frequency should increase.

Does a higher PCR sensitivity test give a different result?

Yes, and this matters when comparing results across laboratories or over time. A laboratory that can detect BCR-ABL down to MR5.0 sensitivity will report 'detectable' on a sample that a less sensitive test would call 'undetectable'. This is why ELN guidance emphasises testing at the same accredited laboratory wherever possible, and why a change of laboratory can appear to change your result even when your disease has not changed. If your blood is moving to a new laboratory, tell your oncologist so any apparent change can be interpreted in that context.

How often is PCR monitoring done on imatinib?

ELN recommends PCR testing every three months until a major molecular response is confirmed, then every three to six months once that response is stable. Frequency may be adjusted if results change, if a treatment break is being considered, or if treatment is switched. Monitoring does not stop once a deep molecular response is reached — in fact it often becomes more attentive at that point, because detecting any rise early matters most when treatment-free remission is being considered or has already begun.

If my result is undetectable, can I stop the medication?

An undetectable result is encouraging, but it is not on its own a reason to stop imatinib. Stopping treatment requires a careful, planned decision based on how long the deep molecular response has been sustained, the type of CML, and your full treatment history — not a single test. Stopping without that assessment carries a real risk of the BCR-ABL level rising again, which would require restarting. If treatment-free remission is something you want to explore, ask your oncologist whether your history meets the criteria in current ELN or NCCN guidance.

What is the International Scale and why does it matter?

The International Scale (IS) is a standardisation method that allows BCR-ABL results from different laboratories to be compared on the same basis. Before the IS was introduced, a major molecular response might be defined differently by different centres, making meaningful comparison impossible. With IS standardisation, a result of 0.1% IS means the same thing whichever accredited laboratory ran the test. When your report says IS%, it is confirming this standardisation has been applied to your result.

What happens if I never reach MR4.5?

Many patients on imatinib maintain a stable MR3.0 for years without ever reaching MR4.5, and that is a legitimate treatment outcome. MR3.0 sustained over time is associated with a low risk of disease progressing, and continuing imatinib at that level is a reasonable long-term plan. MR4.5 matters primarily if treatment-free remission is a goal you and your oncologist are actively working toward. If it is not a current goal, the focus is on keeping the response stable and monitoring for any change in trend.

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Common questions

Frequently asked questions

What does BCR-ABL IS% mean on my blood test report?

BCR-ABL IS% is the percentage of BCR-ABL gene transcripts in your blood relative to a reference gene, measured on the International Scale. The IS suffix means the result has been standardised so it can be compared with results from other accredited laboratories. A lower percentage means less BCR-ABL is detectable. Because the scale is logarithmic, a fall from 1% to 0.1% is a tenfold reduction — a substantial change, not a small one.

What is a good BCR-ABL PCR result?

ELN and NCCN define response milestones rather than a single good number, because what is expected changes with how long you have been on treatment. At three months, a result below 10% IS is a positive early sign. By twelve months, reaching 0.1% IS or below — MR3.0 — is a key milestone. Deeper responses such as MR4.0 and MR4.5 matter later, particularly if treatment-free remission is being considered. Ask your oncologist which milestone applies to where you are in treatment right now.

How long does it take to reach MR4.5 on imatinib?

It varies considerably between patients. Some reach MR4.5 within two to three years; others take longer or plateau at a less deep response. ELN data indicate that a proportion of patients on imatinib reach MR4.0 or deeper over time, but not everyone does, and the pace depends on individual biology. Reaching MR4.5 is not the only measure of how well treatment is working — sustained MR3.0 over many years is also a stable outcome.

Why does my oncologist test BCR-ABL so often?

PCR monitoring is how your oncologist knows the treatment is working and catches any rise in BCR-ABL early, before it becomes clinically significant. A rising result can indicate the disease is becoming less sensitive to imatinib, and acting on that early — by adjusting the dose or switching to a different TKI — is more effective than waiting until the rise is large. ELN and NCCN both recommend regular testing because early detection of change is what makes treatment adjustment most effective.

Can BCR-ABL PCR results be compared between different hospitals?

Yes, if both laboratories are reporting on the International Scale and are accredited for BCR-ABL IS testing. The IS standardisation exists exactly to make cross-laboratory comparison reliable. In practice it is still better to use the same laboratory consistently if you can, because small differences in local calibration can affect where very low results sit relative to defined milestones. If you change hospital or laboratory, let your oncologist know so any apparent change in results can be interpreted in that context.

What does it mean if BCR-ABL becomes detectable again after being undetectable?

A result returning to detectable after being undetectable is called molecular relapse. It does not always mean the disease is progressing clinically — many patients who restart imatinib after a treatment-free remission trial regain a deep response. However, it does mean more frequent monitoring and, depending on the level and trend, possibly restarting or adjusting treatment. Your oncologist will look at the level, whether it is rising between tests, and your full treatment history before deciding the next step.

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